agapow

redcaphelper

py-gsp

Generalized Sequence Pattern matching algorithm in Python

simpleredcapbuilder

A compact description for complex REDCap data dictionaries

agapow.github.io

Personal website (server)

subtypr

Patient subtyping for precision medicine

20171130-biolon-snakemake

Talk at bioinformatics.london on snakemake, written with rst2pdf

agapow.github.io.old

My personal website

bcryptwrapper

Programmatically calling bcrypt commandline utility

binfie-london-jobs

A scrapper to gather bioinformatic jobs in London

biopy-isatab

Python parser for ISAtab, a biological file format for experimental metadata

brew

:beer: The missing package manager for OS X

cookiecutter-pypackage-minimal

A minimal template for python packages

datasan

A general framework for sanitizing datasets

egas

euclids-ci-dev-doc

Development documentation for the EUCLIDS cyberinfrastructure

euclids-redcap-db-schema

Expanded schema for the EUCLIDS REDCap databases using simpleredcapbuilder

find-cassettes

Snakemake pipeline using the mcda approach to identify motif cassettes

genome-subway-py

Experiment in Processing, visualising genomes in subway diagram

graph4ipy

Visualising graphs in IPython

memeparse

Parsing Meme results files for motif information (if you're too dumb to have noticed that BioPython has a module for this)

ml-and-cancer-lecture

Lecture on machine learning for cancer research

multilocus

Analysis of multi-locus population genetic data

pandoc-markdown-presentations

Writing (various format) presentations in markdown, via pandoc: working examples

pycaphelper

Utilities for working with PyCap (which itself works with REDCap)

simpletest

smartr

study-python

Odds and ends, notes and experiments with Python

subcatgeory-an

A fork of the subcategory plugin for pelican

tacs-ms

Analysis and manuscript for analysis of asthma TACs

transmart-docs

Porting the tranSMArt documentation to a saner system