agamat's repositories
ai_all_resources
A curated list of Best Artificial Intelligence Resources
bulkRNAseq-analysis
Bulk-RNA Sequencing Analysis in R
Ca-Backbone-Prediction
Deep Learning for Ca Backbone Prediction from High Resolution CryoEM Data
data_analysis
In this notebook, I applied statistical methods for imbalanced data analysis. In terms of basics, it starts with null check, data description and handling missing values. There exists right skewness in data for numerical columns. Shapiro-Wilk and Anderson darling tests are applied to prove that data is not distributed normally. Outlier detection with IGR is applied for numerical columns. Chi-square test is applied for categorical columns in order to test whether there exist differences between distributions for target columns. Correlation analysis for an imbalanced data set is applied by using undersampling methods.
data_cv
Generate custom CV using R and CSS based on `datadrivencv`
deeplearning-models
A collection of various deep learning architectures, models, and tips
gt-nlp-class
Course materials for Georgia Tech CS 4650 and 7650, "Natural Language"
homologous-missense-constraint
Scripts for curating and evaluating homologous residue constraint
jumpcutter
Automatically edits vidx. Explanation here: https://www.youtube.com/watch?v=DQ8orIurGxw
lightning
The most intuitive, flexible, way for researchers, ML engineers and data scientists to build models (with PyTorch) and ML systems for the ML lifecycle with an obsessive focus on flexibility and performance.
machine-learning-book
Code Repository for Machine Learning with PyTorch and Scikit-Learn
MGcount
MGcount github repository
Neonate-and-Adult-Human-Platelet-RNASeq-and-RiboSeq-Data-Analyese
The R code used to analyze neonate and adult human platelet RNA-seq and Rib-seq data.
notebooks-1
Implement, demonstrate, reproduce and extend the results of the Risk articles 'Differential Machine Learning' (2020) and 'PCA with a Difference' (2021) by Huge and Savine, and cover implementation details left out from the papers.
objexplore
A terminal UI to inspect and explore Python objects
PubMedResearchesFilter
Simple software to classify PubMed researches resulted from searching according to their relevance to the review you are writing
scihub
Source code and data analyses for the Sci-Hub Coverage Study
siema
Siema - Lightweight and simple carousel in pure JavaScript
STATISTICS
Repository Containing different Concepts of Statistics for data science and machine learning Covered by me for the academic purpose and self Learning. This Repository includes Tests of Hypothesis such as One sample Z-test, Two sample Z-test, One sample T-test, Two sample T-test, Z-propotion test, Paired T-test, Unpaired T-test, Chi square test for goodness of fit & chi square test for Independence, One-way Anova and Two-way Anova test and test to check normality of the data using shapiro test, and to check variances using Levene test.
tdp43-mutants
Repository for "TDP-43 condensation properties specify its RNA binding and regulatory repertoire"
tests-as-linear
Python port of "Common statistical tests are linear models" by Jonas Kristoffer Lindeløv.
thesisdown
An updated R Markdown thesis template using the bookdown package