José Afonso Guerra-Assunção's repositories
SciPaper_to_eInk_reader
Custom options for using k2pdfopt to convert papers and pdf books to kindle compatible PDFs
23andme2vcf
convert your 23andme raw file to VCF
AI_Growth_Pack
"Unlock the Power of AI-Driven Video Summaries with Streamlit: A Game-Changer for Content Creators and Educators!"
gnome-network-displays
Miracast implementation for GNOME
Gowla-Macro-Boards
Gowla Macro Boards are PCB designs for use with QMK to build DIY Reprogrammable Macro Keyboards for use with a computer.
SnpEffWrapper
Takes a VCF and applies annotations from a GFF using SnpEff
IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
phip-flow
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
pokay
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data
SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
snipit
snipit: summarise snps relative to your reference sequence
Spotify-Musical-Statues
Very very simple way to play 'musical statues' using python and spotify (or any other music player that uses the space key for play/pause)
vcf-parser
vcf parser with annotation
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
xbmc
Kodi is an award-winning free and open source home theater/media center software and entertainment hub for digital media. With its beautiful interface and powerful skinning engine, it's available for Android, BSD, Linux, macOS, iOS, tvOS and Windows.