aezarebski

vegacookbook

A port of the BBC ggplot2 cookbook into vega and vegalite

aas-extended-examples

A collection of notebooks used in the tutorials for the applied analytic statistics course in 2020

github-tutorial

A tutorial on the use of git, and GitHub for open and reproducible science. See the live version of this here: https://aezarebski.github.io/misc/github-tutorial/README.html

timtam2

This repository is an implementation of the TimTam likelihood as a BEAST2 package.

nicemacs

configuration for spacemacs

timtam

Code to carry out the computational experiments described in the manuscript "A computationally tractable birth-death model that combines phylogenetic and epidemiological data"

epi-sim

A library for simulating epidemics, with a focus on phylodynamics and observation models.

spacemacs

A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!

beasts-castle

This repository contains some helpful scripts for working with BEAST2.

timtam-calibration-study

timtam-tajikistan

timtamslamR

functions to make it easier to work with the timtam BEAST2 package

aezarebski.github.io

backgammon-clock

A Fischer style clock for backgammon

beast2-site

beast2 web development site

bibread

biology-github-tutorial

Question https://github.com/aezarebski/github-tutorial/tree/q4-tweak#question-4

CBAN

releases of beast2 packaged zip files in a reliable location

conflict-resolution-example

Question 4 of https://github.com/aezarebski/github-tutorial

copilot.el

An unofficial Copilot plugin for Emacs.

covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

covid19db-figshare

either

the EitherT monad transformer

git-usage

maxima-layer

Spacemacs layer that configures maxima.el

milligram

A minimalist CSS framework.

oxcovid19

An R API to the Oxford COVID-19 Database

phylodynamic-covasim

An example of how to use covasim for simulations which can be analysed with phylodynamic methods

whipper-snipper

My yasnippet files

white-chocolate-macadamia

a haskell stack template for a cookie cutter project