AmyW's repositories
biostat561
Course materials for BIOST561
presentations
Presentations of potentially broad interest
stamps2018
Amy's teaching materials for STAMPS @ MBL in 2018
TreeUncertainty
Incorporating uncertainty in tree space
talon_user
Amy's user folder for talon
summer-institutes
Course materials for Probability and Statistical Inference (SISG/SISMID)
ConfidenceSets
Code accompanying my confidence sets research
ShotgunSeq
Statistical machine learning for shotgun metagenomic data
antirarefaction
Code accompanying "Rarefaction, alpha diversity, and statistics"
DivNet_supplementary
This code reproduces all results in the DivNet manuscript
talon_beta_user
My commands for talon beta
alpha-error-rates
Estimating Type 1 and 2 error rates for diversity testing
atom-talon
Atom package for integration with Talon (talonvoice.com)
biost561shoppinglist
Our class' shopping list (HW 5c)
differential-abundance-theory
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
personalpkg
My personal R package
Platynereis-gametogenesis-Kuehn-et-al-2021
This repository contains all the codes and other documents related to the manuscript Kuehn et al 2021.
q2-breakaway
QIIME2 plug-in for breakaway
q2-corncob
QIIME2 Plug-in for CORNCOB
statdivlab
Resources for members and collaborators of the Statistical Diversity Lab
technical_replicates
Code for technical replicates Statistical Diversity Lab blog posts