Adrien Le Meur's repositories
adrien.le-meur
Online CV
atelierNGS
Scripts pour l'atelier NGS
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Best-README-Template
An awesome README template to jumpstart your projects!
bibliography
My bibliography Adrien Le Meur
bioinfo
Various bioinformatics tools
comparativeGenomicProject
Projet Génomique Comparative - Adrien & Audrey & Leila
fastq-dl
Download FASTQ files from SRA or ENA repositories.
full_table_samples
Liste complète des fichiers utilisés dans le cadre du stage "Identification d'ADN de pathogène dans des échantillons anciens"
genotube
genotube
kraken2
The second version of the Kraken taxonomic sequence classification system
maketube
maketube is an artificial genome generator for Mycobacterium tuberculosis
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
mykrobe
Antibiotic resistance prediction in minutes
partitionFinder
python script to generate a multisequence matrix from VCF
samclip
Filter SAM file for soft and hard clipped alignments
sentieon-scripts
Helper scripts for biological data processing from Sentieon
TB-detective
Repo for TB-detective
TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
twine-css-template
Twine2 is a great tool for beginners to make games, but there aren't customization options out of the box, and the way to use CSS is not well documented. This template is a well-commented basic reset that allows you to make your game look unique without knowing too much about CSS.