adong's repositories
adong77.github.io
adong's blog
BioScripts
Scripts for bioinformatics data processing and analysis
ChatGPT_Bioinformatics
Data and code from "Many bioinformatics programming tasks can be automated with ChatGPT"
CompBioNSF-Module
Code for module presented at Carleton College, September 29, 2018
Deep-Learning-MHCI
For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
deep-learning-with-python-notebooks
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
Deep_learning_examples
Examples of using deep learning in Bioinformatics
DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
DeepVirFinder
Identifying viruses from metagenomic data by deep learning
ERGO
ERGO is a deep learing based model for predicting TCR-peptide binding.
flask_fullstack
Python全栈开发配套代码
FRAMA
FRAMA: From RNA-seq data to annotated mRNA assemblies
gdkm
Genome Database of Kimchi-associated Microbes (GDKM) is an integrated data management system that produces genomic information of the microorganisms associated with Korean fermented vegetables (kimchi) and makes standardized genome data available to researchers in academia and industry.
ITG-WEBBook
《React工程师修炼指南》相关源码
monetizing-machine-learning
Source code for 'Monetizing Machine Learning' by Manuel Amunategui and Mehdi Roopaei
netTCR
predicting peptide and TCR interaction
News-Websites-Crawling-And-Searching
This is a web project about crawling and searching news websites by node.js.
NG-Tax
NG-Tax is an improved pipeline for 16S rRNA gene amplicon sequencing data. Several novel steps ensure improved robustness against errors associated with technical aspects of these studies, such as PCR protocols, choice of 16S rRNA gene variable region and variable rates of sequencing error. The commonly reported problems such as many un- or poorly classified OTUs, inflated richness and diversity, taxonomic profiles that do not match the expected ones, region dependent taxonomic classification and results being highly dependent on minor changes in the experimental setup have been tackled with NG-Tax.
Qiime16sTutorial
A tutorial on methods of 16S analysis with QIIME 1
Repitope
Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
SARS-CoV-2
Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures
scripts
Bioinformatics projects and code shared by Zhi John Lu
software-tools-review
Code used to generate figures for software tools review
vsearch_example
An example of 16S analysis using VSEARCH