Adam Klie's repositories
beng182project
BENG 182 Protein Database Query Project
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bimm185project
Microbial Profile Generation
fungal_endophthalmitis
Code repository for regular expression pipeline to analyze fungal endophthalmitis cases in MIMIC database
bobs_toolbelt
A Python toolkit for bioinformatic research
CSE253_PA4
PA4 Image Captioning
AGP_exercise_analysis
Analysis of existing American Gut Project data on exercise frequency
bpnet-lite
This repository hosts a minimal version of a Python API for BPNet.
cagi6-prs-docker
Dockerized builds for CAGI6-PRS challenge
CellCommander
Common single cell analysis tasks made runnable with the command line
CRISPR-JAMBOREE
2nd IGVF CRISPR-JAMBOREE
CSE253_PA1
PA1 Logistic and Softmax Regression
enc4_mouse
Scripts to import ENCODE processed data for snRNA-seq experiments and snATAC-seq experiments to Seurat and ArchR objects, respectively.
exRNA_breast_cancer
Analysis of microbial sequences in exRNA for cancer prediction
gene_program_evaluation
Evaluation framework for gene program inferred from single-cell omics data
predictMEE
Predicting missing metadata with recurrent neural network (RNNs) based entity extraction
Pytorch-VAE-tutorial
A simple tutorial of Variational AutoEncoders with Pytorch
topic_grn_links_datasets
A companion repository to topic_grn_links for downloading and preprocessing data