adamjtaylor

miniature

Use dimensionality reduction to create thumnails for high-dimensional imaging

auto-minerva

paperpile-bibtex

bioformats2raw

Bio-Formats image file format to raw format converter

contactsheet

data-models

Schema.org Data Models for HTAN

data_curator_config

Project configurations for the Data Curator App

good-enough-practices

Good Enough Practices in Scientific Computing

hello

Classic hello world script in Nextflow language

HistoQC

HistoQC is an open-source quality control tool for digital pathology slides

htan-artist

A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.

htan-artist-launcher

htan-portal

The HTAN Data Portal

mcmicro

Multiple-choice microscopy pipeline

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nextflow-infra

AWS CloudFormation templates for deploying Nextflow infrastructure

nf-synindex

Nextflow pipeline for indexing S3 objects in Synapse

nf-synstage

Nextflow pipeline for staging files from Synapse

ome-tiff-pyramid-tools

Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.

py-dcqc

Python package for performing quality control (QC) for data coordination (DC)

retype

scicomp-provisioner

An service to auto provision resources

scimap

Spatial Single-Cell Analysis Toolkit

seurat

R toolkit for single cell genomics

single-dev-env

Example used to try a single container sample of Docker Dev Environments

synapse-web-monorepo

Monorepo for Synapse Web projects

synapsegenie

This package can deploy a AACR GENIE like project on Synapse and perform validation and processing of files.

tablet-classification

test-datasets

Test data to be used for automated testing with the nf-core pipelines

ucie