(under development...)
Protein Data Bank (RCSB-PDB):
Basic Local Alignment Search Tool (BLAST):
- Using the Common URL API [doc]
UniProt
- Access programmatically [doc]
A review of machine learning methods to predict the solubility of overexpressed recombinant proteins in Escherichia coli [paper]
DeepSol: A Deep Learning Framework for Sequence-Based Protein Solubility Prediction [paper] [source]
Structural Learning of Proteins Using Graph ConvolutionalNeural Networks [paper]
SolXplain: An Explainable Sequence-Based Protein Solubility Predictor [paper]
Solart: A Structure-Based Method To Predict Protein Solubility And Aggregation [paper] [Webserver]
deepNF: deep network fusion for protein function prediction (Bioinformatics 2018) [paper]
- graph construction: k-nearest neighbours according to relative distance
Biopython - freely available tools for biological computation [doc] [doc_cn]
ssbio - python package for structural systems biology [doc]
PyMOL - a user-sponsored molecular visualization system [web]
Pyecharts - open source visualization tools for Jupyter [Github]