acorg / signature-page

Programs to import phylogenetic tree and draw it on a tree or signature page

signature-page

Programs to import phylogenetic tree and draw it on a tree or signature page

Making tree for the signature page from the WHO CC sequence and HI tables

see acmacs-whocc/doc/signature-page.org

Drawing tree

• Init settings

  ~/AD/bin/sigp --seqdb ~/AD/data/seqdb.json.xz --init-settings tree.settings.json tree.json.xz /tmp/tree.pdf && open /tmp/tree.pdf
  

• Edit settings in tree.settings.json

• Generate pdf with the tree

  ~/AD/bin/sigp --seqdb ~/AD/data/seqdb.json.xz -s tree.settings.json tree.json.xz tree.pdf && open tree.pdf
  

Signature page

• Init settings

  ~/AD/bin/sigp --seqdb ~/AD/data/seqdb.json.xz --chart <chart.sdb> --init-settings sigp.settings.json tree.json.xz /tmp/sigp.pdf && open /tmp/sigp.pdf
  

• Edit settings in sigp.settings.json

• Generate pdf with the signature page

  ~/AD/bin/sigp --seqdb ~/AD/data/seqdb.json.xz --chart <chart.sdb> -s sigp.settings.json tree.json.xz sigp.pdf && open sigp.pdf