Agustín Andrés Corbat's repositories
folder_convention
An overview of possible way of organizing project folders.
anisotropy_errors
A small interactive package to test and study the effecto of different sources of noise and errors in anisotropy estimation.
apoptoside
Analysis for apoptotic cascade experiments.
caspase_model
Variations to EARM used in papers published from Grecco's Lab.
gulliver
An image analysis package for whole slide liver immunostainings
barcode_library_characterizer
A small package for characterizing big (huge) libraries of barcodes.
base_paper
Clean paper to use as starting point.
Bio-image_Analysis_with_Python
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
EMBO-Practical-Course-2023
Advanced methods in bioimage analysis
git_workshop
a small repository with a single file to practice git skills.
gnn_transformers_notebooks
Notebooks for the ENCCS Graph Neural Networks and Transformers workshop
gpu-programming
Meta-GPU lesson covering general aspects of GPU programming as well as specific frameworks
is_even
A function to check that a number is even.
is_odd
checks if number is odd
lintrec
Small package containing useful tools to analyze and interpret lineage tracing experiments.
liver_lineage_test
Small model to analyze liver lineage tracing model from Ober paper.
morphocilia
Package for cilia segmentation and morphological description, and bile duct and canaliculi regionalization during development of liver thick sections.
my_checksum
Generate an excelsheet with the MD5 checksum of all files inside the provided path.
my_profiles
A little repo to keep my profile and settings files.
organoid_analyzer
Segmenter and morphological analyzer for organoids.
programming_formalisms
Repository for the Programming Formalisms course
programming_formalisms_testing
Lesson 'testing' of the UPPMAX Programming Formalisms course
radiobiologia
Notebooks interactivos para entender mejor radiobiología
readlif
Fast Leica LIF file reader written in python
risk_and_req_acorbat
Short document to list and plan projects.
tesis_doctoral
Mi tesis doctoral sobre Microespectroscopía aplicada a la cuantificación y modelado de la propagación de señales en redes biológicas.
TREX
Simultaneous lineage TRacking and EXpression profiling of single cells using RNA-seq