globodechicle's repositories
denovoTE-eval
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
EDTA
Extensive de-novo TE Annotator
emojicode
😀😜🔂 World’s only programming language that’s bursting with emojis
Helitron
TE annotation pipeline Helitron Scanner
Insect_REs
Scripts and data files used to study repetitive elements across insects in "The repetitive element landscape of insects"
moiR
Useful R functions for an easier life and analyses
popTAP
This repository contains a custom pipeline used to asses transposon absence polymorphisms (TAP) using short read illumina data.
pafr
Read, manipulate and visualize 'Pairwise mApping Format' data in R
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
scripts
Scripts for analysis used during the course
SVs_in_1301_A.thaliana_lines
Structural Variation Calling Pipeline with NGS Data