1 |
2019/01 |
BioBERT |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/042651668507a1ddda2d65d0b52cd36696816a901131aca13d347a46646c69f5/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f646d69732d6c61622f62696f626572743f7374796c653d736f6369616c) |
2 |
2019/02 |
BERT-MIMIC |
BERT |
MLM, NSP |
110M, 340M |
N/A |
3 |
2019/04 |
BioELMo |
ELMo |
Bi-LM |
93.6M |
GitHub ![](https://camo.githubusercontent.com/13bf16d576002de923a5c2d006a52b286ad05c8f43ad0d053a8f1f9c4168722b/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f416e64792d6a71612f62696f656c6d6f3f7374796c653d736f6369616c) |
4 |
2019/04 |
Clinical BERT (Emily) |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/7cef5bd70bf3b5de3e4d721f7b76f757298f74de2cf341d4379dc778f5837fae/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f456d696c79416c73656e747a65722f636c696e6963616c424552543f7374796c653d736f6369616c) |
5 |
2019/04 |
ClinicalBERT (Kexin) |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/976bbecd7cbc748630ac431751b0e1cd01aae90d6c1290a969e1b1b70f8d05bc/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6b6578696e6875616e6731323334352f636c696e6963616c424552543f7374796c653d736f6369616c) |
6 |
2019/06 |
BlueBERT |
BERT |
MLM, NSP |
110M, 340M |
GitHub ![](https://camo.githubusercontent.com/94612944e8a6951268db100df9ccba395f7fc18a629ec2b7bb8189a7a5f521c6/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6e6362692d6e6c702f626c7565626572743f7374796c653d736f6369616c) |
7 |
2019/06 |
G-BERT |
GNN + BERT |
Self-Prediction, Dual-Prediction |
3M |
GitHub ![](https://camo.githubusercontent.com/3315eb9e40f572592e07d051a7f079315bf7ccf29e890c4bec5f2a339d711630/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6a7368616e673132332f472d426572743f7374796c653d736f6369616c) |
8 |
2019/07 |
BEHRT |
BERT |
MLM, NSP |
N/A |
GitHub ![](https://camo.githubusercontent.com/ee2180317fb70aaa04e3a895b07d723616239c9b1613fc8ab60246190432ac88/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f646565706d65646963696e652f42454852543f7374796c653d736f6369616c) |
9 |
2019/08 |
BioFLAIR |
FLAIR |
Bi-LM |
N/A |
GitHub ![](https://camo.githubusercontent.com/877d225df92c8a0ca07f1ba048fd979f2147bae8598b4347a369fe6470a91956/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f736872657961736875622f42696f464c4149523f7374796c653d736f6369616c) |
10 |
2019/09 |
EhrBERT |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/f0ae1dbd548943ebb889ca8060d2bcd3e232ea4f242fb9ce7e0f7de6394c29e7/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f756d61737362656e746f2f656872626572743f7374796c653d736f6369616c) |
11 |
2019/12 |
Clinical XLNet |
XLNet |
Generalized Autoregressive Pretraining |
110M |
GitHub ![](https://camo.githubusercontent.com/1bd418f0cd3d444105e897e5aea71d2e6c46348ce358e9ca393d095d3261b896/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6c696e6476616c6c6c61622f636c696e6963616c584c4e65743f7374796c653d736f6369616c) |
12 |
2020/04 |
GreenBioBERT |
BERT |
CBOW Word2Vec, Word Vector Space Alignment |
110M |
GitHub ![](https://camo.githubusercontent.com/290197f953b7be31f32b174de8acbbc216fc914bfe90c913a9d136735046b2f5/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6e706f652f636f7669642d71613f7374796c653d736f6369616c) |
13 |
2020/05 |
BERT-XML |
BERT |
MLM, NSP |
N/A |
N/A |
14 |
2020/05 |
Bio-ELECTRA |
ELECTRA |
Replaced Token Prediction |
14M |
GitHub ![](https://camo.githubusercontent.com/68ba8745c04058f455d8c71c82726ee470c0c208b26aa9b16bbf4fe4b76a10f2/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f5363694372756e63682f62696f5f656c65637472613f7374796c653d736f6369616c) |
15 |
2020/05 |
Med-BERT |
BERT |
MLM, Prolonged LOS Prediction |
110M |
GitHub ![](https://camo.githubusercontent.com/7edee23a72874063e5f87f0553caad23fecef16eb22fd6f56976a4230bd7b0bb/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f5a686947726f75702f4d65642d424552543f7374796c653d736f6369616c) |
16 |
2020/05 |
ouBioBERT |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/fab06956ed70e776f0faf3ca8449af75987375b7d5025b70b2a7bf90a9562127/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f73792d776164612f626c75655f62656e63686d61726b5f776974685f7472616e73666f726d6572733f7374796c653d736f6369616c) |
17 |
2020/07 |
PubMedBERT |
BERT |
MLM, NSP, Whole-Word Masking |
110M |
HuggingFace |
18 |
2020/08 |
MCBERT |
BERT |
MLM, NSP |
110M, 340M |
GitHub ![](https://camo.githubusercontent.com/afb1cb81f8f6d6b314134a65222a45cbc9b9da691bcd1d4bb1b9cb0aaef41a38/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f616c69626162612d72657365617263682f4368696e657365424c55453f7374796c653d736f6369616c) |
19 |
2020/09 |
BioALBERT |
ALBERT |
MLM, SOP |
12M, 18M |
GitHub ![](https://camo.githubusercontent.com/67f243d2d863fe17abde95e86af8ccea00f9179c6eafbed1d985eb8af8961631/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f75736d61616e6e2f42696f414c424552543f7374796c653d736f6369616c) |
20 |
2020/09 |
BRLTM |
BERT |
MLM |
N/A |
GitHub ![](https://camo.githubusercontent.com/b75f4a57dfcdf2a44c709ed9952216d1ed9cb1b1fa8ac2f175bd4d02f01adc56/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6c616e79657869616f73612f62726c746d3f7374796c653d736f6369616c) |
21 |
2020/10 |
BioMegatron |
Megatron |
MLM, NSP |
345M, 800M, 1.2B |
GitHub ![](https://camo.githubusercontent.com/05d56e78ff3ceb04cc23d8a689ea179a3ad6436f190772f3adfaf678c9c50569/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f4e56494449412f4e654d6f3f7374796c653d736f6369616c) |
22 |
2020/10 |
CharacterBERT |
BERT + Character-CNN |
MLM, NSP |
105M |
GitHub ![](https://camo.githubusercontent.com/b80dfd9e383dd12d04d6e9ccf2442babbe063836763d09e95d7a861ab6b09ce7/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f68656c626f756b6b6f7572692f6368617261637465722d626572743f7374796c653d736f6369616c) |
23 |
2020/10 |
ClinicalTransformer |
BERT - ALBERT - RoBERTa - ELECTRA |
MLM, NSP - MLM, SOP - MLM - Replaced Token Prediction |
110M - 12M - 125M - 110M |
GitHub ![](https://camo.githubusercontent.com/f76ce8c1bf603f673b6efe893886adf4545d16fe0e79864daab4b7e343b4caae/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f75662d686f62692d696e666f726d61746963732d6c61622f436c696e6963616c5472616e73666f726d65724e45523f7374796c653d736f6369616c) |
24 |
2020/10 |
SapBERT |
BERT |
Multi-Similarity Loss |
110M |
GitHub ![](https://camo.githubusercontent.com/78edc363281cac183f1920ba2e39635c8293dc01aadde7b345fabd9186a07944/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f63616d6272696467656c746c2f736170626572743f7374796c653d736f6369616c) |
25 |
2020/10 |
UmlsBERT |
BERT |
MLM |
110M |
GitHub ![](https://camo.githubusercontent.com/adf6ea107069967499a8f07b43d7cbe6e3bf94934b070fc2f0c72d96da315152/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f676d696368616c6f2f556d6c73424552543f7374796c653d736f6369616c) |
26 |
2020/11 |
bert-for-radiology |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/855f08a527795032265fdc0418e32e70116b359a6eeff24a30946245be2cbc4d/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f7241496469616e63652f626572742d666f722d726164696f6c6f67793f7374796c653d736f6369616c) |
27 |
2020/11 |
Bio-LM |
RoBERTa |
MLM |
125M, 355M |
GitHub ![](https://camo.githubusercontent.com/a2a719809aa6edda05b95e365b2c8be0140b9d1883dc1cfa2680cce47ffd145c/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f66616365626f6f6b72657365617263682f62696f2d6c6d3f7374796c653d736f6369616c) |
28 |
2020/11 |
CODER |
PubMedBERT - mBERT |
Contrastive Learning |
110M - 110M |
GitHub ![](https://camo.githubusercontent.com/94e9d82efebf6939b754c075c01843243e510f14fc6717e4637a9265227e5c76/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f47616e6a696e5a65726f2f434f4445523f7374796c653d736f6369616c) |
29 |
2020/11 |
exBERT |
BERT |
MLM, NSP |
N/A |
GitHub ![](https://camo.githubusercontent.com/3441bc27be14b882e133ab4d482242b967b24398c82a7fba9a7f0e48160ad9ea/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f63676d68616963656e7465722f6578424552543f7374796c653d736f6369616c) |
30 |
2020/12 |
BioMedBERT |
BERT |
MLM, NSP |
340M |
GitHub ![](https://camo.githubusercontent.com/3776b0bd151bf81b2d186a75294738b75893c9c56d4f24a295fa823c61ffbc17/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f42696f4d6564424552542f62696f6d6564626572743f7374796c653d736f6369616c) |
31 |
2020/12 |
LBERT |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/39aaf32657cd89c1b4e20650f52aed1cdd8be03b528ae958492d98eda21160ea/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f776172696b6f6f6e652f4c424552543f7374796c653d736f6369616c) |
32 |
2021/04 |
CovidBERT |
BioBERT |
MLM, NSP |
110M |
N/A |
33 |
2021/04 |
ELECTRAMed |
ELECTRA |
Replaced Token Prediction |
N/A |
GitHub ![](https://camo.githubusercontent.com/a9b3d1dbf56b7fc158e6edd31d03815c0c5cffe6c244052c792aef703f8cc87c/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f676d706f6c692f656c65637472616d65643f7374796c653d736f6369616c) |
34 |
2021/04 |
KeBioLM |
PubMedBERT |
MLM, Entity Detection, Entity Linking |
110M |
GitHub ![](https://camo.githubusercontent.com/1bb669d29350ed897325fff19d1254866e62179050b5212659c7a49d5ab97e69/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f47616e6a696e5a65726f2f4b6542696f4c4d3f7374796c653d736f6369616c) |
35 |
2021/04 |
SINA-BERT |
BERT |
MLM |
110M |
N/A |
36 |
2021/05 |
ProteinBERT |
BERT |
Corrupted Token, Annotation Prediction |
16M |
GitHub ![](https://camo.githubusercontent.com/a05db647c540cd5add1794304346b051a271ad64d363ecef0c166d4c7150f4a8/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6e616461766272612f70726f7465696e5f626572743f7374796c653d736f6369616c) |
37 |
2021/05 |
SciFive |
T5 |
Span Corruption Prediction |
220M, 770M |
GitHub ![](https://camo.githubusercontent.com/472ca78b69192d59d7078dde492de4385dccb167098d06673c09ff94e7c866bd/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6a757374696e7068616e333131302f536369466976653f7374796c653d736f6369616c) |
38 |
2021/06 |
BioELECTRA |
ELECTRA |
Replaced Token Prediction |
110M |
GitHub ![](https://camo.githubusercontent.com/76d2efccb1870cb91639abbf748cd5a7f45db6760a4890567f9e1b89828ad13e/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6b616d616c6b72616a2f42696f454c45435452413f7374796c653d736f6369616c) |
39 |
2021/06 |
EntityBERT |
BERT |
Entity-centric MLM |
110M |
N/A |
40 |
2021/07 |
MedGPT |
GPT-2 + GLU + RotaryEmbed |
LM |
N/A |
N/A |
41 |
2021/08 |
SMedBERT |
SMedBERT |
Masked Neighbor Modeling, Masked Mention Modeling, SOP, MLM |
N/A |
GitHub ![](https://camo.githubusercontent.com/88198ee80bc9e4c1043ff7868aca0d39557feb6a39cd2c3e77c7ef4cd7b7a4e0/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f4d61744e4c502f534d6564424552543f7374796c653d736f6369616c) |
42 |
2021/09 |
Bio-cli |
RoBERTa |
MLM, Subword Masking or Whole Word Masking |
125M |
GitHub ![](https://camo.githubusercontent.com/5861e0cb13fd81e2a8d8c0c85c4312780bb79c727dbb662d2fa776ef76e99453/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f506c616e544c2d474f422d45532f6c6d2d62696f6d65646963616c2d636c696e6963616c2d65733f7374796c653d736f6369616c) |
43 |
2021/11 |
UTH-BERT |
BERT |
MLM, NSP |
110M |
GitHub ![](https://camo.githubusercontent.com/a229ec1ba960379bb39b1295d5b357b927b79c5fcca5e75f7c8391e6ecdd481d/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6a696e7365696b656e61692f7574682d626572743f7374796c653d736f6369616c) |
44 |
2021/12 |
ChestXRayBERT |
BERT |
MLM, NSP |
110M |
N/A |
45 |
2021/12 |
MedRoBERTa.nl |
RoBERTa |
MLM |
123M |
GitHub ![](https://camo.githubusercontent.com/e0a7edf2e278354f0ae08d2e3c6625c64d703aaf8d79cccf47e6542e94de47fe/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f636c746c2d73747564656e74732f7665726b696a6b5f7374656c6c615f726d615f7468657369735f64757463685f6d65646963616c5f6c616e67756167655f6d6f64656c3f7374796c653d736f6369616c) |
46 |
2021/12 |
PubMedELECTRA |
ELECTRA |
Replaced Token Prediction |
110M, 335M |
HuggingFace |
47 |
2022/01 |
Clinical-BigBird |
BigBird |
MLM |
166M |
GitHub ![](https://camo.githubusercontent.com/34dacb7314a0b2324e96735c835f97ad365d9dfc608409c17d6421f71204021e/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6c756f7975616e6c61622f436c696e6963616c2d4c6f6e67666f726d65723f7374796c653d736f6369616c) |
48 |
2022/01 |
Clinical-Longformer |
Longformer |
MLM |
149M |
GitHub ![](https://camo.githubusercontent.com/34dacb7314a0b2324e96735c835f97ad365d9dfc608409c17d6421f71204021e/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6c756f7975616e6c61622f436c696e6963616c2d4c6f6e67666f726d65723f7374796c653d736f6369616c) |
49 |
2022/03 |
BioLinkBERT |
BERT |
MLM, Document Relation Prediction |
110M, 340M |
GitHub ![](https://camo.githubusercontent.com/abac3ca85a9036bfe1ccab6a49dd6295495986388a89c95dd2818a555b1846fe/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6d69636869796173756e6167612f4c696e6b424552543f7374796c653d736f6369616c) |
50 |
2022/04 |
BioBART |
BART |
Text Infilling, Sentence Permutation |
140M, 400M |
GitHub ![](https://camo.githubusercontent.com/aa240e735fcaa1513c26d5c562b94db5293b517cf5e8fb668c9a48d031e38b05/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f47616e6a696e5a65726f2f42696f424152543f7374796c653d736f6369616c) |
51 |
2022/05 |
bsc-bio-ehr-es |
RoBERTa |
MLM |
125M |
GitHub ![](https://camo.githubusercontent.com/5861e0cb13fd81e2a8d8c0c85c4312780bb79c727dbb662d2fa776ef76e99453/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f506c616e544c2d474f422d45532f6c6d2d62696f6d65646963616c2d636c696e6963616c2d65733f7374796c653d736f6369616c) |
52 |
2022/05 |
PathologyBERT |
BERT |
MLM, NSP |
110M |
HuggingFace |
53 |
2022/06 |
RadBERT |
RoBERTa |
MLM |
110M |
GitHub ![](https://camo.githubusercontent.com/30204853acc6bf8639bc06d361f1b7f4cfb466fcf90da292a2acd9cb1345a2b3/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f7a7a78736c702f526164424552543f7374796c653d736f6369616c) |
54 |
2022/06 |
ViHealthBERT |
BERT |
MLM, NSP, Capitalized Prediction |
110M |
GitHub ![](https://camo.githubusercontent.com/8094d4db5f529b1cab76fd439074ee081ae96b24cd4650ac479c92b645341441/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f64656d646563756f6e672f76696865616c7468626572743f7374796c653d736f6369616c) |
55 |
2022/07 |
Clinical Flair |
Flair |
Character-level Bi-LM |
N/A |
GitHub ![](https://camo.githubusercontent.com/cb96133efd98fbd16da3c79d06847210f75ed49fb68c8fbd906205049393d36b/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f706c6e636d6d2f7370616e6973682d636c696e6963616c2d666c6169723f7374796c653d736f6369616c) |
56 |
2022/08 |
KM-BERT |
BERT |
MLM, NSP |
99M |
GitHub ![](https://camo.githubusercontent.com/1c6c64a8d447f7a04b016fa37575518065c6cb26b1a944b9cc941f51c8e9eb58/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f4b552d524941532f4b4d2d424552542d4b6f7265616e2d4d65646963616c2d424552543f7374796c653d736f6369616c) |
57 |
2022/09 |
BioGPT |
GPT |
Autoregressive Language Model |
347M, 1.5B |
GitHub ![](https://camo.githubusercontent.com/73a7ed78642add6deccbfa9e6eb8c70b1788b04d79b2784ae745103cb4e22dca/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6d6963726f736f66742f42696f4750543f7374796c653d736f6369616c) |
58 |
2022/10 |
Bioberturk |
BERT |
MLM, NSP |
N/A |
GitHub ![](https://camo.githubusercontent.com/49f5587ab32d8a409467b07af764b61a4955e39f5b398ee26620bd710e6896a6/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f68617a616c7475726b6d656e2f42696f4245525475726b3f7374796c653d736f6369616c) |
59 |
2022/10 |
DRAGON |
GreaseLM |
MLM, KG Link Prediction |
360M |
GitHub ![](https://camo.githubusercontent.com/37a32853413d490909d20ccf068ebaadbf2f871c34c4a188f71ad661a1459b73/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6d69636869796173756e6167612f647261676f6e3f7374796c653d736f6369616c) |
60 |
2022/10 |
UCSF-BERT |
BERT |
MLM, NSP |
135M |
N/A |
61 |
2022/10 |
ViPubmedT5 |
ViT5 |
Spans-masking learning |
220M |
GitHub ![](https://camo.githubusercontent.com/715a26376a013b1e2eee51d631c25c903d5017e4450b254c1eac5108383db75b/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f7669657461692f56695075626d65643f7374796c653d736f6369616c) |
62 |
2022/12 |
ALIBERT |
BERT |
MLM |
110M |
N/A |
63 |
2022/12 |
BioMedLM |
GPT2 |
Autoregressive Language Model |
2.7B |
GitHub ![](https://camo.githubusercontent.com/d41643e80ea1716b0f548ebdd529edf041bac49f4f60dbc8163046dc43564066/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f7374616e666f72642d6372666d2f42696f4d65644c4d3f7374796c653d736f6369616c) |
64 |
2022/12 |
BioReader |
T5 & RETRO |
MLM |
229.5M |
GitHub ![](https://camo.githubusercontent.com/e330155e351b46da021c2cd762f158391f9146eea610d5cc5cd76467c08d92cf/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f646973692d756e69626f2d6e6c702f62696f2d7265616465723f7374796c653d736f6369616c) |
65 |
2022/12 |
clinicalT5 |
T5 |
Span-mask Denoising Objective |
220M, 770M |
N/A |
66 |
2022/12 |
Gatortron |
BERT |
MLM |
8.9B |
GitHub ![](https://camo.githubusercontent.com/0eb6a906a131461107310a245df450ae58faf3c475445f767b5ebc3844417d48/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f75662d686f62692d696e666f726d61746963732d6c61622f4761746f7254726f6e3f7374796c653d736f6369616c) |
67 |
2022/12 |
Med-PaLM |
Flan-PaLM |
Instruction Prompt Tuning |
540B |
Official Site |
68 |
2023/01 |
clinical-T5 |
T5 |
Fill-in-the-blank-style denoising objective |
220M, 770M |
PhysioNet |
69 |
2023/01 |
CPT-BigBird |
BigBird |
MLM |
166M |
N/A |
70 |
2023/01 |
CPT-Longformer |
Longformer |
MLM |
149M |
N/A |
71 |
2023/02 |
Bioformer |
Bioformer |
MLM, NSP |
43M |
GitHub ![](https://camo.githubusercontent.com/7f813350ea0fba51b95593fc925d18f9e20f4f51fcbba79c72e3ac7d8ed3c93e/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f57474c61622f62696f666f726d65723f7374796c653d736f6369616c) |
72 |
2023/02 |
Lightweight |
DistilBERT |
MLM, Knowledge Distillation |
65M, 25M, 18M, 15M |
GitHub ![](https://camo.githubusercontent.com/02d6ba799340836436796eb75ebce0336068bc9ec6b8a9621d1715c10e801baa/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6e6c7069652d72657365617263682f4c696768747765696768742d436c696e6963616c2d5472616e73666f726d6572733f7374796c653d736f6369616c) |
73 |
2023/03 |
RAMM |
PubmedBERT |
MLM, Contrastive Learning, Image-Text Matching |
N/A |
GitHub ![](https://camo.githubusercontent.com/02c3703c8aaa2cbd0d0ede5e13d6bcc183a110ffc57a3da9c88ac85c374dc238/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f47616e6a696e5a65726f2f52414d4d3f7374796c653d736f6369616c) |
74 |
2023/04 |
DrBERT |
RoBERTa |
MLM |
110M |
GitHub ![](https://camo.githubusercontent.com/a121227579dd6945e34b24cc54467924722c8fb976781afbb9afc1bf766cbfb5/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f71616e617374656b2f4472424552543f7374796c653d736f6369616c) |
75 |
2023/04 |
MOTOR |
BLIP |
MLM, Contrastive Learning, Image-Text Matching |
N/A |
GitHub ![](https://camo.githubusercontent.com/b8abbc2972d991a1baa065f8c3d09206cea20e09782d894055ad03b62ec8882d/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f6368656e7a6376372f4d4f544f523f7374796c653d736f6369616c) |
76 |
2023/05 |
BiomedGPT |
BART backbone + BERT-encoder + GPT-decoder |
MLM |
33M, 93M, 182M |
GitHub ![](https://camo.githubusercontent.com/6e227e714d79b3de5eab2b25f36bba069ec05c06bc9c809179680aeed618bf84/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f74616f6b7a2f42696f6d65644750543f7374796c653d736f6369616c) |
77 |
2023/05 |
TurkRadBERT |
BERT |
MLM, NSP |
110M |
N/A |
78 |
2023/06 |
CamemBERT-bio |
BERT |
Whole Word MLM |
111M |
HuggingFace |
79 |
2023/06 |
ClinicalGPT |
T5 |
Supervised Fine Tuning, Rank-based Training |
N/A |
N/A |
80 |
2023/06 |
EriBERTa |
RoBERTa |
MLM |
125M |
N/A |
81 |
2023/06 |
PharmBERT |
BERT |
MLM |
110M |
GitHub ![](https://camo.githubusercontent.com/d6a40131a578d507bbc0f223604aca7356b7506152fa3ecf1b45887f2c5d2a65/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f5461686141736c616e692f506861726d424552543f7374796c653d736f6369616c) |
82 |
2023/07 |
BioNART |
BERT |
Non-AutoRegressive Model |
110M |
GitHub ![](https://camo.githubusercontent.com/c12dcdfc0ac9943ec9a8b9d02a382ef9c771aba7b3086db9775f4836b7520585/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f61697374616972632f42696f4e4152543f7374796c653d736f6369616c) |
83 |
2023/07 |
BIOptimus |
BERT |
MLM |
110M |
GitHub ![](https://camo.githubusercontent.com/4c0ba7ab787c98f65a8ed64183909303374c775b2b6d81055f38939293634997/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f73746172732f7274746c2d61692f62696f7074696d75733f7374796c653d736f6369616c) |
84 |
2023/07 |
KEBLM |
BERT |
MLM, Contrastive Learning, Ranking Objective |
N/A |
N/A |