accumb3ns

accumb3ns.github.io

ARACNe-AP

Network Reverse Engineering through AP inference of Mutual Information

blog

CombBLAS

The Combinatorial BLAS (CombBLAS) is an extensible distributed-memory parallel graph library offering a small but powerful set of linear algebra primitives specifically targeting graph analytics.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

datasciencecoursera

datasharing

The Leek group guide to data sharing

DeMAND-algorithm

The Drug Mechanism of Action Algorithm Developed in the Califano Lab

dupRadar

Duplication rate quality control for RNA-Seq datasets.

ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

gettingAndCleaningDataFinal

Repo for Getting and Cleaning Data: Final Course Project

PAML

Multi-Platform Launcher Framework

PML

Practical-Machine-Learning---Final-Project

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

r-music

RepData_PeerAssessment1

Peer Assessment 1 for Reproducible Research

respiratory-depression

rseqc

RNA-Seq Quality Control: Generates QC metrics for RNA-Seq data using the RSeQC suite; a graphical report of these metrics can be viewed on the DNAnexus website

sample-sheet

A permissively licensed library designed to replace Illumina's Experiment Manager

SG170207-1-Assessing-MOR-expression-in-Dentate-Gyrus-by-progenitor-and-granule-cells

SG180414-1-LD-pretest-on-Cohort-16

sleuth

Differential analysis of RNA-Seq

SMC-RNA-Examples

Statistical-Inference-Final