acarafat

BioinfUtil

Regularly used bioinformatics script for different purposes

tangler

Create Simple Tanglegram in R

subtractive_analysis

Paralog and ortholog filtering

DiffLogo_Scripts

Implementation of DiffLogo in R

fast_mathjax

Superfast MathJax-Latex Plugin for Wordpress

acarafat

AlphaDefensin

Some python scripts created for sequence mining during alpha-defensin evolutionary analysis project

auto_CAMP

AMP prediction using CAMP webserver: automation, pattern matching and scale-up

bioconda-recipes

Conda recipes for the bioconda channel.

ChIP-Seq_project1_gen242

competition_experiment

newton_calculator

clustSub

Formatting and summerizing mutations

coursera-deep-learning-specialization

Notes, programming assignments and quizzes from all courses within the Coursera Deep Learning specialization offered by deeplearning.ai: (i) Neural Networks and Deep Learning; (ii) Improving Deep Neural Networks: Hyperparameter tuning, Regularization and Optimization; (iii) Structuring Machine Learning Projects; (iv) Convolutional Neural Networks; (v) Sequence Models

epidemic_haplotypes

fastqviz

Genotype_clade_visualizer

mutational-stability-study

Codes I use during mutational stability studies

Phylogeo_utilities

Some commonly used scripts during phylogeography analysis

projectGen220

Bradyrhizobium genome analysis for GEN220 project

pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram)

split_multifasta

Split a file containing multiple fasta sequences into individual files containing multiple fasta file

symbioUtil

Often used R functions to analyze plant harvest data

tutorials