Miguel FB Abulencia's repositories
DockerImages
Docker files being maintained
30-Days-Of-Python
30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos may help too: https://www.youtube.com/channel/UC7PNRuno1rzYPb1xLa4yktw
AntArtic
Pipeline for lineage assignment and other analyses post artic
arete
AMR/VF LGT focused bacterial genomics analysis workflow
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Figaro
Pipeline for analyzing HIVDR samples sequenced using Oxford Nanopore Technologies (ONT).
DNABERT_S
DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
evo
DNA foundation modeling from molecular to genome scale
handson-ml3
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
Karumata
HIV pipeline
Katmon
Pipeline for detecting coinfection of SARS-CoV-2 variants.
melonmask
Masking regions flagged to be mix sites and regions with reads in the negative control
mlstPhylogeny
Phylogeny using MLST genes
ntEmbd
Deep learning embedding for nucleotide sequences
philippines-json-maps
Philippine administrative boundaries in geojson and topojson format at various resolution.
primer-schemes
Primer schemes for real-time genome epidemiology
pytorch-transformer
Attention is all you need implementation
snipit
snipit: summarise snps relative to your reference sequence