Abhijeet Shah's repositories
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ngs-protocols
Scripts to run several protocols to processing and analyzing of Next-Generation Sequencing data
ploidyNGS
Explore ploidy levels from NGS data alone
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qPCR-Biomark
Biomark Fluidigm qPCR data set: processing and analysis
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RADseqR
A R wrapper package for Stacks RADseq package
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rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
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satminer
satMiner: A Toolkit to NGS satellite DNA mining and analysis
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transrate
Understand your transcriptome assembly
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