ShortRNA-nf
Pipeline for processing shortRNA-seq data
If you are using easybuild modules each step uses a different combination of 4 modules that need to be loaded:
- STAR
- SAMtools
- BEDtools
- KentUtils
The adapter trimming step instead uses cutadapt
Pipeline for processing shortRNA-seq data
If you are using easybuild modules each step uses a different combination of 4 modules that need to be loaded:
The adapter trimming step instead uses cutadapt