abrazhe

image-funcut

View, analyse and transform dynamic imaging data

pyhht

Python toolbox for the Hilbert-Huang transform

KSVDPy

python version of K-SVD algorithm

shearlexity

uCats

A set of routines for analsyis of Ca dynamics in fluorescent microscopy data

astro-ncx-model-demo

Supplementary demo for submission to Frontiers in Cellular Neuroscience

AstroSpace

Modeling branching morphology of astrocytes with the Space Colonization Algorithm (by Runions 2007)

Curvelet.jl

Implementation of the Uniform Discrete Curvelet Transform (UDCT)

d_code

2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS

Hardware

Printed circuit boards used in the NINScope

imageprocessing

Images.jl

An image library for Julia

joypy

Joyplots in Python with matplotlib & pandas :chart_with_upwards_trend:

morphsnakes

Morphological snakes for image segmentation and tracking

nbpc

Supporting materials for the "Neurobiophysics" course [Spring 2016]

nbpc-china

Supporting materials for the neurobiophysics course in Shenzhen 2017

nbpc-masters-ru

Supporting materials for the master student neurobiophysics course, starting fall 2018

neuro.im-proc

OASIS

Deconvolution of calcium imaging data

OC2

py-sparse-filtering

Python implementation of the Sparse Filtering code by Ngiam et al.

pyksvd

A highly optimized, parallel implementation of the Batch-OMP version of the KSVD learning algorithm.

pyraman

simple routines for Raman spectra

python-bioformats

Read and write life sciences file formats

python-quantities

Quantities package for the python programming language

scikit-image

Image Processing SciKit (Toolbox for SciPy)

sipc

SIPC stands for a short image processing course

spc

Module for reading, exploring and converting *.spc spectroscopic binary data in Python.

Spencermodel

The reconstruction of Spencer et al 2012 model of octopus cells

visvis

Visvis - the object oriented approach to visualization