abrahamnunes

fitr

Tools for computational psychiatry research.

newton-raphson

An implementation of logistic regression with the Newton-Raphson method.

diversity

abrahamnunes.github.io

My Jekyll blog

criticism

A package for simulation-based criticism of machine-learning models.

BDDG-NEURON

Dentate gyrus network model pattern separation and granule cell scaling in epilepsy (Yim et al 2015)

belt

My personal utility belt with functions I use commonly.

characteristic-impairments-rl-bn

constrained-optimization-cognitive-models

Code for `The Importance of Constraint Smoothness for Parameter Estimation in Computational Cognitive Modeling`

BioinformaticsAlgorithms

Tutorials for CSCI 4181/6802 at Dalhousie University. Currently listing tutorials for winter term 2018.

comorbidity_networks

Code at data for "The architecture of co-morbidity networks of physical and mental health conditions in military veterans", Proceedings of the Royal Society A, 2020

Conductor.jl

Choo-choo

Distributions.jl

A Julia package for probability distributions and associated functions.

Doing_bayesian_data_analysis

Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

edward

A probabilistic programming language in TensorFlow. Deep generative models, variational inference.

fitr-old

A toolbox for computational psychiatry

gan_numpy

genoml

Analytical tools for genomics data in Python 3+.

gwasim

Evolve synthetic data for machine learning on genomic data.

intro_dgm

An Introduction to Deep Generative Modeling: Examples

LDScoreJulia.jl

mmh

more-sagemath-tutorials

More SageMath Tutorials: A place to share and evolve tutorials for Sage, with the aim to contribute them to Sage

MST

Mnemonic Similarity Task

neurosynth

Neurosynth core tools

notebooks

Jupyter notebooks for the Natural Language Processing with Transformers book

Padamsey-et-al-Neuron-2021

Padamsey*, Katsanevaki, Dupuy and Rochefort*

RRH

Code for ``Representational Rényi Heterogeneity'' by Nunes A, Alda M, Bardouille T, and Trappenberg T.

syde556

thesis-supplement-files

Supplementary code for Nunes A. Measurement of Heterogeneity in Computational Psychiatry (PhD Thesis)