Abner's repositories
bonito-ont
Docker wrapper for bonito basecalling
dotfiles
personal dotfiles
dotfiles-1
Configuration for Arch Linux, i3, termite, fish, Vim and more
dotfiles-2
Sway acid dark
ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
ngs_pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
pipelines-nextflow
NBIS nextflow pipelines framework
plantismash
Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.
PMJ_Manuscript_repository
A collection of workflows and code used for the assembly of PMJ
qiaseq-dna
example code for processing reads from QIAGEN QIAseq DNA enrichment kits
sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
SimAir_genome
Repository for the analysis of DilSuf genome
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
STAR-SEQR
RNA Fusion Detection and Quantification
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
TrackSig
A framework to infer mutational signatures in cancer over time
trunkvar
A script to convert to trunk_var file
voidrice
My dotfiles (deployed by LARBS)
XPS13-9300-hackintosh
opencore hackintosh xps 13 9300