Beast code in Giters

ABiMS - Station Biologique de Roscoff - France - CNRS/SU's repositories

ansible-singularity

https://galaxy.ansible.com/lecorguille/singularity

GPL-3.04 2 5

D4_marine_eukaryote_genomics_portal

EOSC-Life Demonstrator 4

Language:Python1 10

drap

Fork of DRAP (http://www.sigenae.org/drap) modified for ABiMS cluster

Language:Perl1 2 5

These Ansible recipes allow the deployment of a Virtual Machine in an OpenStack cloud via the Terraform software, the installation of the GGA environment and its dependencies, as well as loading data into the Galaxy library.

Language:Jinja1 2 1

ansible-sequenceserver

https://galaxy.ansible.com/abims_sbr/sequenceserver: an Ansible Role that installs SequenceServer on Linux and deploys one NCBI BLAST+ server for each BLAST database, reverse-proxied by NGINX, submitting jobs on a SLURM HPC cluster

Language:JinjaMIT04 17

aozan

An automated post sequencing data processing pipeline for Illumina HiSeq

Language:HTMLNOASSERTION000

bioanalyse_protocoles

A list of bio-analyse protocoles

030

configs

Config files used to define parameters specific to compute environments at different Institutions

Language:NextflowMIT010

D4_marine_eukaryote_genomics_portal_docker

Marine Eukaryote Genomics Portal Docker

Language:HTMLGPL-3.0030

galaxy-blastprivate

Language:PythonGPL-3.0020

galaxy-blastvisu

Visualisation for Blast XML outputs under Galaxy

Language:Mako02 4

MCSC_Decontamination

Scripts and documentations on the MCSC decontamination method

Language:Perl030

tools-abims

Language:PythonGPL-3.0020

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

Language:PythonMIT020

training-material

A collection of training material from offered Galaxy courses

Language:HTMLNOASSERTION020

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

Language:PerlBSD-3-Clause000

tripal_linkout

The Linkout module provides a web service for generation of external links

Language:PHP000

WinstonCleaner

Language:PythonNOASSERTION030

adaptsearch

A pipeline for the search of adaptive mutations and positively selected genes from RNASeq orthologs

Language:PythonGPL-3.001 10

ansible-gitlab-runner

Ansible role to install gitlab-runner (Major update 1.2.0 please verify your jobs!)

Language:PythonMIT010

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell030

biomaj-data

Sample community db properties and postprocesses

Language:Perl020

docker_slurm_exec

000

goslim-analysis

Language:RGPL-3.0030

HoloVir

HoloVir is a robust and flexible data analysis pipeline that provides an optimised and validated workflow for taxonomic and functional characterisation of viral metagenomes