abdenlab

abdenlab

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abdenlab's repositories

oxbow

Read specialized NGS formats as data frames in R, Python, and more.

Language:RustLicense:Apache-2.0Stargazers:48Issues:7Issues:16
Language:Jupyter NotebookStargazers:2Issues:3Issues:0

VCFormer

Read and flatten VCF data into DataFrames

Language:PythonLicense:MITStargazers:2Issues:3Issues:1

dask-ngs

Scalable access to bioinformatics data with Dask and Oxbow

Language:PythonLicense:MITStargazers:1Issues:3Issues:3
Language:JavaScriptLicense:MITStargazers:1Issues:1Issues:2
Language:Jupyter NotebookStargazers:0Issues:3Issues:0

deepC

A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

Language:HTMLLicense:GPL-3.0Stargazers:0Issues:0Issues:0

embedden

Lego blocks for neighbor embedding and projection pipelines

Language:C++License:MITStargazers:0Issues:1Issues:0
Language:PythonStargazers:0Issues:0Issues:0

jupyter_rfb

Remote Frame Buffer for Jupyter

Language:PythonLicense:MITStargazers:0Issues:0Issues:0