Applied Bioinformatics Core @ Weill Cornell Medicine's repositories
RubioNavarro_Pancreas
Scripts related to single-cell and bulk RNA-seq data of mouse pancreata as presented by Rubio-Navarro et al.
Cao_Epicardium
Scripts related to scRNA-seq data analysis
CovaxxHIV
Scripts and read counts for bulk RNA-seq
Chandran2021
Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)
KlebanoffMR4050
SIFT-seq data for patient MR4050
Klebanoff0606T1
SIFT-seq data for patient 0606T1
Klebanoff21LT2
SIFT-seq data for patient 21LT2
GeartySchietinger
Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)
this-and-that
Collection of notes and scripts that may come in handy
Notaras_MolPsy
Code for the analysis of brain-organoid-derived single-cell RNA-seq data as published in Notaras et al., 2021
Shakiba2020
Code for the analyses of bulk RNA-seq and ATAC-seq presented in Shakiba et al., J Exp Med (2021)
RenHIV
Scripts and data for the bulk RNA-seq analysis of HIV-infected CD4 T cells as published in Ren et al., J Virol (2021)
Scott2019
Code and data for the bulk RNA-seq and bulk ATAC-seq data of tumor-infiltrating CD8 T cells (and controls) as published in Scott et al., Nature (2019).
Hajjar2021_Blood
Analyses of amplicon-sequencing of the ANXA2 gene as published in Fassel et al., Blood (2021)
Barbet2019
Code for processing of scRNA-seq and VDJ data for the manuscript of Barbet et al.