aarthi31

metquest-1

Enumerating biosynthetic pathways in metabolic networks

gutmicrobiome

Contains all the codes and the files required to generate the images in the paper titled "Unraveling microbial interactions in the gut microbiome"

aarthi31.github.io

Aarthi Ravikrishnan's website

balance

An R package to visualize balances of compositional data without dendrograms

BEEM

BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

biolearn

Machine learning tools for biomarker analysis

BubbleCV

This is a professional CV template inspired by the legendary secret agent James Bond. BubbleCV is designed to effectively showcase your skills, work experience, education, and contact information in a sleek and impactful manner.

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

chenlab-training

CODAinPractice

Compositional Data Analysis in Practice

drugs_bioaccumulation

fiber-fermented-study

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

gneiss

compositional data analysis toolbox

Groningen-Microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

HELIUS

hospital_microbiome

Intel_SPR

Introduction_to_R

This repository contains the documentation, background material, scripts, and data for a tutorial on the Introduction to R. This introductory workshop is greared towards people with a interest/ background in geography and environmental science.

Jenior_RIPTiDe_2020

Repository associated with RIPTiDe publication

MAGBinning

Another MAG binning pipeline

MetaErgInstallHelper

A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline

metagenomeSeq

Statistical analysis for sparse high-throughput sequencing

panchangam

Computing the Indian calendar/panchangam and festivals using Swiss ephemeris

paper

Materials and Code for the micom manuscript.

Shotgun-Metagenomics-Analysis

Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more

stag-mwc

StaG Metagenomic Workflow Collaboration

Topcuoglu_ML_mBio_2020

Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

training-collection

Collection of bioinformatics training materials