aarmey

ruff

An extremely fast Python linter and code formatter, written in Rust.

kotaemon

An open-source RAG-based tool for chatting with your documents.

jupytext

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

pueue

:stars: Manage your shell commands.

biopython

Official git repository for Biopython (originally converted from CVS)

scanpy

Single-cell analysis in Python. Scales to >1M cells.

Gen.jl

A general-purpose probabilistic programming system with programmable inference

audapolis

an editor for spoken-word audio with automatic transcription

jaxopt

Hardware accelerated, batchable and differentiable optimizers in JAX.

diff-zoo

Differentiation for Hackers

anndata

Annotated data.

Scientific-Inkscape

Scientific Inkscape: Inkscape extensions for figure resizing and editing

rootstock

Clone me to create your Manubot manuscript

manubot

Python utilities for Manubot: Manuscripts, open and automated

atree

Stevan Apter-style trees in C++17

NiLang.jl

A differential eDSL that can run faster than light and go back to the past.

dimityjones

electronic escape novel requiring readers to solve puzzles before reading the next chapter

dotfiles

Hack away :)

NonNegLeastSquares.jl

Some nonnegative least squares solvers in Julia

TensorDecompositions.jl

A Julia implementation of tensor decomposition algorithms

fides

Trust Region Optimization in Python

template_benchmark

matcouply

Learning coupled matrix factorizations in Python

skprocrustes

scikit-procrustes, a collection of solvers for the (Weighted) Orthogonal Procrustes Problem

lfiax

SECSI

Demo implementation for the SEmi-algebraic framework for the approximate CP decompositions via SImultaneous Matrix Diagonalizations (SECSI).

ml-for-bioe

Materials for BE 175 at UCLA.

FcRegression.jl

Study Fc antibody dynamics using a multivalent binding model

VIC-Analysis

Data Analysis for VIC

C-SECSI-Minimal

A minimal implementation for coupled decomposition of three-way tensors using the C-SECSI framework.