Anandashankar Anil's repositories
charon
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
DailyRead
The NGI Daily Read
dds_cli
API to access Scilifelab Data Centre's delivery portal. On development
dds_web
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
genologics
Python interface to the GenoLogics LIMS server via its REST API.
genologics_sql
Python interface for the Genologics Postgres database.
genomics-status
Tornado server for tracking samples at NGI Stockholm
HiCapTools
A software suite for Probe Design and Proximity Detection for targeted chromosome conformation capture applications
irma-provision
Ansible playbooks for provisioning NGI pipeline and related sw
mdx_outline
Python-Markdown extension to wrap the document logical sections (as implied by h1-h6 headings)
miarka-provision
Ansible playbooks for provisioning NGI cluster Miarka
MultiQC_NGI
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
nf-co.re
Files for the main nf-core website >>>
NGI_dashboards
SciLifeLab NGI Dashboard Code
ngi_pipeline
Code driving the production pipeline at SciLifeLab
ngi_reports
Code to generate reports for use by the NGI in SciLifeLab
ngisweden.se
Wordpress theme and plugins for ngisweden.se
scilifelab_epps
A collection of Genologics Clarity LIMS EPPs used at Scilifelab.
seqinspector
(hopefully nf-core) pipeline to inspect your sequences
spectacles
API for a clearer look at clarity
standalone_scripts
Repository to store standalone scripts that do not belong to any bigger package or repository
taca-ngi-pipeline
A TACA plugin adding functionality relevant for the ngi_pipeline
userman
Simple user account handling system for use with web services. Built on top of Tornado and CouchDb.