aametwally

Halstead-Complexity-Measures

Calculate Halstead complexity software measures using ASTParser. These metrics are computed statically, without program execution.

MetaLonDA

METAgenomic LONgitudinal Differential Abundance method

FoodAllergyPredictor

LearningFoodPreferences

OmicsLonDA

Longitudinal analysis of OMICS features

MC_MicroSimilarities

WEVOTE-strain

Extension of WEVOTE algorithm to identify microbes on strain level

CF_LTx_Microbiome

tsmp

R Functions implementing UCR Matrix Profile Algorithm (http://www.cs.ucr.edu/~eamonn/MatrixProfile.html).

WEVOTE-web

Cloud package of WEVOTE framework

alphafold

Open source code for AlphaFold.

avatarify

Avatars for Zoom and Skype

cgm_wearables

client

🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

cs228-notes

Course notes for CS228: Probabilistic Graphical Models.

DeepRC

DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning

eng-practices

Google's Engineering Practices documentation

faiss

A library for efficient similarity search and clustering of dense vectors.

gitignore

A collection of useful .gitignore templates

ipop_seasonal

iPOP Multiomics Seasonal Analysis

kraken2

The second version of the Kraken taxonomic sequence classification system

Metabolic_Subphenotype_Predictor

mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

MSApriori

nextflow

A DSL for data-driven computational pipelines

noah

Bash on Ubuntu on macOS

oh-fitbit-intraday

redun

Yet another redundant workflow engine

SpliceAI

A deep learning-based tool to identify splice variants