aabor / rstudio

RStudio in docker container with additional packages

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rstudio docker image

aabor/rstudio docker image is based on official rocker/tidyverse image which contains RStudio and basic tidyverse packages. For precise and full description of installed packages in aabor/rstudio image, please, refer to corresponding Dockerfile.

Build is automated by SCM polling

openssh enabled.

Different Fonts 'TrueType', 'OpenType', Type 1, web fonts, etc.

Java 8

openxlsx, XLConnect (Java dependent)

R packages for C++

Additional tidyverse companion packages for time series

A Tool Kit for Working with Time Series in R

timetk

Bringing financial analysis to the 'tidyverse'

tidyquant

Working with png and jpeg files

Math and statistical packages

R Interface to the Yacas Computer Algebra System

Ryacas

Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier

e1071

Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation

mclust

Companion to Applied Regression

car

A range of axis labeling algorithms

labeling

Forecasting Functions for Time Series and Linear Models

forecast

Linear Mixed-Effects Models using 'Eigen' and S4

lme4

Classification and Regression Training

caret

Breiman and Cutler's Random Forests for Classification and Regression

randomForest

Solve optimization problems using an R interface to NLopt. NLopt is a freegcopen-source library for nonlinear optimization.

nloptr

A collection of dimensionality reduction techniques from R packages and a common interface for calling the methods

dimRed

A collection of tests, data sets, and examples for diagnostic checking in linear regression models.

lmtest

Core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

survival

Packages additional to ggplot

Based Publication Ready Plots

ggpubr

Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points

ggrepel

Network Analysis and Visualization

igraph

RESTful API

Generate and serve an HTTP API from R functions

plumber

logging # usufull for concurrent applications

rstudio-finance docker image

aabor/rstudio-finance docker image is based on aabor/rstudio and adds R financial libraries for financial trading, forcasting.

popular financial time series packages and time series models

quantmod, qrmtools, rugarch.

highfrequency financial data analysis

Fourier integrals, Kalman filter, jump detection.

Bayesian Inference for time series

BEST, bayesm, bsts, evdbayes, bsamGP ecc.

Monte Carlo simulation

MCMCpack, mcmcse, sgmcmc ecc.

For precise and full description of installed packages in aabor/rstudio-finance, please, refer to corresponding Dockerfile

rstudio-text docker image

aabor/rstudio-text docker image is based on aabor/rstudio and adds R libraries for text processing: qdap, topicmodels, textmineR, tesseract, stringdist among others. For precise and full description of installed packages in aabor/rstudio-text, please, refer to corresponding Dockerfile.

poppler and corresponding R package pdftools for Text Extraction, Rendering and Converting of PDF Documents. Utilities based on libpoppler for extracting text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering of PDF documents info PNG, JPEG, TIFF format, or into raw bitmap vectors

docker-compose

Creates containers:

rstudio

rstudio-finance

rstudio-text

nbdatascience

Webhooks

Build is triggered in Jenkins via Webhook

Generic Webhook Trigger > Trigger builds remotely (e.g., from scripts) > Authentication Token

Use the following URL to trigger build remotely: JENKINS_URL/job/rstudio/build?token=TOKEN_NAME or /buildWithParameters?token=TOKEN_NAME Optionally append &cause=Cause+Text to provide text that will be included in the recorded build cause

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RStudio in docker container with additional packages

License:GNU Affero General Public License v3.0


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