aabbas90 / libct

A fast approximate primal-dual solver for tracking-by-assignment cell-tracking problems

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libct

A fast approximate primal-dual solver for tracking-by-assignment cell-tracking problems. For running assue the Gurobi is installed. Meson is required for building (can be easily installed via pip). Afterwards:

./setup-dev-env

installs in a temporary directory and opens up a shell. To run cell-tracking run:

python bin/ct <INPUT_FILE>

Where the INPUT_FILE is a cell tracking instance.

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A fast approximate primal-dual solver for tracking-by-assignment cell-tracking problems

License:MIT License


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Language:C++ 56.6%Language:Python 37.8%Language:C 2.3%Language:Meson 1.8%Language:Shell 1.4%Language:SWIG 0.1%