a1eko / morphon

neuron morphology processing tools

morphon

Neuron morphology processing scripts:

• mcheck test morphology reconstruction for structural consistency
• mfind find singularities in morphological reconstruction
• mmeter perform morphometric analysis
• mmod modify morphology
• mrep repair or correct neuron morphology
• msholl Sholl analysis of morphological reconstruction
• mview view neuron morphology

See command line help for details.

Installation

Install the latest release:

pip install morphon

Install a development version:

pip install git+git://github.com/a1eko/morphon

See pip documentation for installation alternatives.

For an updated trimmed and streamlined version of this package, see treem.