a113n's repositories
bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
bcbio-nextgen-vm
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
cbioportal
cBioPortal for Cancer Genomics
cookbook
Cookbook for Node on FHIR and the clinical Meteor.js build pipeline. Create FDA, HIPPA, and HL7 compliant Javascript/Node applications!
docker-django-local
Dockerfiles to create images for use in local Django development environments
docker-pycron
Configurable scheduling for custom python scripts
geneimpacts
prioritize effects of variant annotations from VEP, SnpEff, et al.
how_to_build_a_bitcoin_startup
This is the code for "How to Build a Bitcoin Startup" by Siraj Raval on Youtube
medplum
Medplum is a healthcare platform that helps you quickly develop high-quality compliant applications.
MotionCollector
iOS app for collecting data from internal motion sensors (gyroscope, magnetometer, accelerometer) of iPhone and Apple Watch.
node-on-fhir
Tech stack for building MACRA and 21st Century Cures compliant webapps.
OpenAI-Whisper-Audio-Transcription-And-Summarization-Chatbot
Web app enabling users to either record or upload audio files. Then utilizing OpenAI API (Whisper, GPT4) generates transcriptions, summaries, fact checks, sentiment analysis, and text metrics. Users can also intelligently chat about their transcriptions with a GPT4 chatbot. Data is stored relationally in SQLite and also vectorized in Pinecone.
stain_adversarial_learning
Using adversarial feature learning and color augmentation to address the variability in histopathology images
StainTools
Tools for tissue image stain normalization and augmentation in Python 3. [python, scientific]
streamlit_whisper_transcription
Streamlit Audio Transcription with OPENAI's Whisper Ai: An interactive Streamlit app demonstrating real-time audio transcription using OPENAI's Whisper Ai.
varapp-backend-py
Django backend to varapp
varapp-frontend-react
React frontend to varapp