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Zewei Song (ZeweiSong)

ZeweiSong

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Company:University of Minnesota

Location:St Paul, MN

Home Page:http://www.songzewei.org

Github PK Tool:Github PK Tool

Zewei Song's starred repositories

BWA-MEME

BWA-MEME: Faster BWA-MEM2 using learned-index

Language:C++License:MITStargazers:108Issues:0Issues:0

KMC

Fast and frugal disk based k-mer counter

Language:C++Stargazers:259Issues:0Issues:0

kmcp

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

Language:GoLicense:MITStargazers:178Issues:0Issues:0

cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

Language:C++License:BSD-3-ClauseStargazers:78Issues:0Issues:0

vamb

Variational autoencoder for metagenomic binning

Language:PythonLicense:MITStargazers:240Issues:0Issues:0

MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers

Language:PythonLicense:NOASSERTIONStargazers:42Issues:0Issues:0

tidyMicro

tidyMicro GitHup Repository

Language:RStargazers:18Issues:0Issues:0

atlas

ATLAS - Three commands to start analyzing your metagenome data

Language:PythonLicense:BSD-3-ClauseStargazers:363Issues:0Issues:0

DearPyGui

Dear PyGui: A fast and powerful Graphical User Interface Toolkit for Python with minimal dependencies

Language:C++License:MITStargazers:12841Issues:0Issues:0

CoverM

Read coverage calculator for metagenomics

Language:RustLicense:GPL-3.0Stargazers:285Issues:0Issues:0

bfc

High-performance error correction for Illumina resequencing data

Language:TeXLicense:MITStargazers:68Issues:0Issues:0

pyecharts

🎨 Python Echarts Plotting Library

Language:PythonLicense:MITStargazers:14722Issues:0Issues:0

Fantastic-Genomes-And-Where-To-Find-Them

Pipelines for parsing and downloading genomes in NCBI

Language:PythonLicense:MITStargazers:3Issues:0Issues:0

CCMetagen

Microbiome classification pipeline

Language:PythonLicense:GPL-3.0Stargazers:62Issues:0Issues:0

FastANI

Fast Whole-Genome Similarity (ANI) Estimation

Language:C++License:Apache-2.0Stargazers:360Issues:0Issues:0

Bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Language:C++License:GPL-3.0Stargazers:277Issues:0Issues:0

minigraph

Sequence-to-graph mapper and graph generator

Language:CLicense:MITStargazers:402Issues:0Issues:0

ntHash

Fast hash function for DNA/RNA sequences

Language:C++License:MITStargazers:95Issues:0Issues:0

Bacsort

a collection of scripts for organising bacterial genomes by species

Language:PythonLicense:GPL-3.0Stargazers:75Issues:0Issues:0

pavian

🌈 Interactive analysis of metagenomics data

Language:RStargazers:373Issues:0Issues:0

Kraken_db_install_scripts

Updated Kraken DB install scripts to cope with new-ish NCBI structure

Language:PerlLicense:MITStargazers:11Issues:0Issues:0

wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Language:CLicense:GPL-3.0Stargazers:502Issues:0Issues:0

terminal

The new Windows Terminal and the original Windows console host, all in the same place!

Language:C++License:MITStargazers:94697Issues:0Issues:0

freecodecamp.cn

FCC China open source codebase and curriculum. Learn to code and help nonprofits.

Language:CSSLicense:NOASSERTIONStargazers:36933Issues:0Issues:0

Python

All Algorithms implemented in Python

Language:PythonLicense:MITStargazers:183449Issues:0Issues:0

CAMISIM

CAMISIM: Simulating metagenomes and microbial communities

Language:PythonLicense:Apache-2.0Stargazers:164Issues:0Issues:0

pikachuwechat

PikachuWeChat: Play WeChat with itchat-uos.

Language:PythonLicense:Apache-2.0Stargazers:114Issues:0Issues:0

shadowsocks-windows

A C# port of shadowsocks

Language:C#License:NOASSERTIONStargazers:58218Issues:0Issues:0

smhasher

Automatically exported from code.google.com/p/smhasher

Language:C++Stargazers:2617Issues:0Issues:0

The-Economist

The Economist 经济学人，持续更新

Stargazers:3564Issues:0Issues:0