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Zewei Song (ZeweiSong)

ZeweiSong

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Company:University of Minnesota

Location:St Paul, MN

Home Page:http://www.songzewei.org

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Zewei Song's starred repositories

python3-in-one-pic

Learn python3 in one picture.

Language:Jupyter NotebookLicense:MITStargazers:4968Issues:0Issues:0

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Language:CLicense:GPL-3.0Stargazers:258Issues:0Issues:0

recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Language:PythonLicense:NOASSERTIONStargazers:86Issues:0Issues:0

LMAT

Livermore Metagenomic Analysis Toolkit

Language:C++License:GPL-3.0Stargazers:11Issues:0Issues:0

ncbitax2lin

🐞 Convert NCBI taxonomy dump into lineages

Language:PythonLicense:MITStargazers:137Issues:0Issues:0

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

Language:PythonLicense:AGPL-3.0Stargazers:557Issues:0Issues:0

diamond

Accelerated BLAST compatible local sequence aligner.

Language:C++License:GPL-3.0Stargazers:1015Issues:0Issues:0

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

Language:PerlLicense:BSD-3-ClauseStargazers:817Issues:0Issues:0

PyTricks

Collection of less popular features and tricks for the Python programming language

Language:PythonLicense:MITStargazers:3062Issues:0Issues:0

markdown-cheatsheet

Markdown Cheatsheet for Github Readme.md

License:MITStargazers:4970Issues:0Issues:0

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Language:C++License:MITStargazers:1850Issues:0Issues:0

dynamicDBG

Practical Dynamic de Bruijn Graphs

Language:C++License:GPL-3.0Stargazers:18Issues:0Issues:0

HmmUFOtu

An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

Language:C++License:GPL-3.0Stargazers:10Issues:0Issues:0

stLFR_read_demux

Language:PerlLicense:MITStargazers:4Issues:0Issues:0

Bridger_Assembler

Rehost of Bridger Assembler from Sourceforge

Language:C++License:NOASSERTIONStargazers:7Issues:0Issues:0

fuzzywuzzy

Fuzzy String Matching in Python

Language:PythonLicense:GPL-2.0Stargazers:9202Issues:0Issues:0

cutadapt

Cutadapt removes adapter sequences from sequencing reads

Language:PythonLicense:MITStargazers:509Issues:0Issues:0

CheckM

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Language:PythonLicense:GPL-3.0Stargazers:332Issues:0Issues:0

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

Language:JavaScriptLicense:NOASSERTIONStargazers:52Issues:0Issues:0

python-louvain

Louvain Community Detection

Language:PythonLicense:BSD-3-ClauseStargazers:941Issues:0Issues:0

mmh3

Python wrapper for MurmurHash (MurmurHash3), a set of fast and robust hash functions.

Language:C++Stargazers:24Issues:0Issues:0

mmh3

Python extension for MurmurHash (MurmurHash3), a set of fast and robust hash functions.

Language:CLicense:MITStargazers:317Issues:0Issues:0

Hortaea_werneckii

Hortea experimental evolution and reannotation project

Language:GoLicense:CC0-1.0Stargazers:1Issues:0Issues:0

FunGAP

FunGAP: fungal Genome Annotation Pipeline

Language:PythonStargazers:108Issues:0Issues:0

EMIRGE

EMIRGE reconstructs full length ribosomal genes from short read sequencing data.

Language:PythonStargazers:37Issues:0Issues:0

notes-python

中文 Python 笔记

Language:Jupyter NotebookStargazers:6906Issues:0Issues:0

python-alignment

Native Python library for generic sequence alignment

Language:PythonLicense:BSD-3-ClauseStargazers:55Issues:0Issues:0

jupyterlab

JupyterLab computational environment.

Language:TypeScriptLicense:NOASSERTIONStargazers:14035Issues:0Issues:0

gffutils

GFF and GTF file manipulation and interconversion

Language:PythonLicense:MITStargazers:283Issues:0Issues:0

Specifications

GFF and GVF specification documents

Stargazers:207Issues:0Issues:0