Ming Hu's repositories
cable-bible
A guide to cables and connectors used for audiovisual tech
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
datajoint-python-atlab
Relational data pipelines for the science lab - atlab fork
dictdiffer
Dictdiffer is a module that helps you to diff and patch dictionaries.
dj-docs
Documentation of datajoint @ Kavli Institute
dj_nda
nda schema for Reimer lab's datajoint database
EthoPy
State control system for automated behavioral training
fMRI_ROI_Analysis_Tool_joss_review
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
jnormcorre
Jax implementation of normcorre
MINI2P_toolbox
The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
open-computational-neuroscience-resources
A publicly-editable collection of open computational neuroscience resources
pipecontrol
Website for interactions with pipeline.
pipeline
Schemata and libraries for neuroscientific data
PyMouse
Presenting Visual stimulus and Behavioral conditioning with mice
pyqtgraph
Fast data visualization and GUI tools for scientific / engineering applications
pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
SpectralSegmentation
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
SRDTrans
SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising
wfield
Tools to process widefield data
zotero-research-assistant
Zotero Research Assistant Powered by Large Language Models