Zeigar's repositories
control_package
A toolbox for implementing Network Control Theory analyses in python
network_TDA_tutorial
A hands-on tutorial on network and topological neuroscience
sr_enn
Constructing neural network models from brain data reveals representational transformations linked to adaptive behavior. Nat Commun 2022, 673.
GED_tutorial
Code accompanying publication on GED tutorial, Cohen, M. X. A tutorial on generalized eigendecomposition for denoising, contrast enhancement, and dimension reduction in multichannel electrophysiology. NeuroImage 247, 118809, doi:https://doi.org/10.1016/j.neuroimage.2021.118809 (2022).
MITK
The Medical Imaging Interaction Toolkit.
papto
Brady, B., & Bardouille, T. (2022). Periodic/Aperiodic parameterization of transient oscillations (PAPTO)–Implications for healthy ageing. NeuroImage, 251, 118974.
brainsmash
Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity
tedana
TE-dependent analysis of multi-echo fMRI
C-PAC-1
Configurable Pipeline for the Analysis of Connectomes
PyDDM
A drift-diffusion modeling (DDM) framework for Python3
LAYNII
Stand alone fMRI software suite for layer-fMRI analyses.
event_detection
Individualized event structure drives individual differences in whole-brain functional connectivity, NeuroImage Volume 252, 15 May 2022, 118993
nipy
Neuroimaging in Python FMRI analysis package
Mansson_etal_2022_BiolPsychiatry
Månsson, K. N., Waschke, L., Manzouri, A., Furmark, T., Fischer, H., & Garrett, D. D. (2022). Moment-to-moment brain signal variability reliably predicts psychiatric treatment outcome. Biological Psychiatry, 91(7), 658-666.
EEG_denoising_method
Holo-Hilbert spectral-based noise removal method for EEG high-frequency bands
dashboard
tigrlab dashboard development
dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
suarez_neuromorphicnetworks
Code supporting Suarez et al., Learning function from structure in neuromorphic networks. Nat Mach Intell 3, 771–786 (2021).
MedMNIST
[v1 (ISBI'21) + v2] MedMNIST: A Large-Scale Lightweight Benchmark for 2D and 3D Biomedical Image Classification
TAAC
TMS Adaptable Auditory Control
med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
pydeface
A tool to remove facial structure from MRI images.
ggseg
Plotting tool for brain atlases, in ggplot
muxViz
Analysis and Visualization of Interconnected Multilayer Networks
eprime3-lsl-package-file
E-Prime 3.0 package to enable LSL.
KSmodel_fMRIdynamics
Modular origins of high-amplitude cofluctuations in fine-scale functional connectivity dynamics, PNAS, November 8, 2021 | 118 (46) e2109380118
nonstandard_modularity_maximization
Modularity maximization as a flexible and generic framework for brain network exploratory analysis,NeuroImage Volume 244, 1 December 2021, 118607
ENIGMA
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠