Z_Wael's repositories
swimplot_v2
fixing some overlapping and blanck time (more adequate for retrospective data trt time)
cBioPortalData
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
coursera-data-visualisation-in-SAS
coursera data visualisation in SAS
docs
TensorFlow documentation
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
ImmuneSubtypeClassifier
An R package for classification of immune subtypes, in cancer, using gene expression data.
io
Dataset, streaming, and file system extensions maintained by TensorFlow SIG-IO
Kassandra
Bostongene cell deconvolution algorithm from RNAseq
labs
Rmd source files for the HarvardX series PH525x
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
MFP
Mollecular Functional Portraits
rna-count-kallisto
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
rnafusion
RNA-seq analysis pipeline for detection gene-fusions
rsample_ZW
Classes and functions to create and summarize resampling objects
rstatix
Pipe-friendly Framework for Basic Statistical Tests in R
rvest
Simple web scraping for R
scalismo-microsite
microsite for the scalismo project
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
survival
Survival package for R
TumorShallowSeq
Cancer prognosis with shallow tumor RNA sequencing