Yyx2626

Adam Yongxin Ye's repositories

HTGTSrep

The computational pipeline and some relevant tools of LAM-HTGTS-Rep-SHM-Seq

Language:CMIT3 1 2

MosaicLinkage

MosaicLinkage is a java tool kit to explore local haplotypes based on stretched reads in a bam file.

MIT2 10

yyxParkingSimulation

Parking Simulation

Language:RApache-2.02 10

Fred_Alt_Lab

Public code repository for Prof. Frederick Alt's lab

Language:Python1 10

HTGTS_related

Some scripts related to data analysis of HTGTS

Language:PerlMIT1 10

yyxMosaicHunter

yyxMosaicHunter is an R package implemented MosaicHunter model using numerical algorithm, which could run for low-throughput ultra-high-depth sites in targeted sequencing such as PASM.

MIT1 10

AI_applications

My demo applications using Artificial Intelligence (AI)

Language:PythonApache-2.0010

gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

Language:Java010

VDJ_annotation

scripts and pipeline of VDJ annotation for HTGTS tlx files

Language:PerlMIT010

gemini

a lightweight db framework for disease and population genetics.

Language:PythonMIT010

hello-world

Just Hello World from GitHub

010

PhD_thesis_appendix_2018

appendix of my PhD thesis in Peking University, in 2018

000

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Language:Java010