Beast code in Giters

Yunxia Liu's starred repositories

Genome-wide contact analysis using sklearn

Language:PythonMIT5700

A Python implementation of the original DI domain caller

Language:PythonGPL-3.01300

A toolkit for analyzing architectural stripes

Language:PythonGPL-3.01800

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

Language:PythonNOASSERTION5500

A fast and efficient tool for converting chromatin interaction data between genome assemblies

Language:PythonNOASSERTION6300

A Python implementation for BH-FDR and HiCCUPS

Language:PythonGPL-3.04000

Data and the co-authored network I extracted for lab selection in 3D genome research field

Language:Python1300

Jupyter notebooks I created during reading Allen Downey's book Think Complexity

Language:Jupyter Notebook300

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

Language:PythonGPL-3.03900

Python solutions for Project Euler

Language:Python600

An easy-to-use Hi-C data processing software supporting distributed computation.

Language:PythonGPL-3.05100