YingdiZhang

SMSBoom

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AbdomenCT-1K

The official repository of "AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?"

AnatomySketch-Software

A medical image segmentation software supporting user interventions and user-defined funtion extention

astra-toolbox

ASTRA Tomography Toolbox

cmake-examples

Useful CMake Examples

ConvNeXt

Code release for ConvNeXt model

CS61A-Fall2020

CS61A at Berkeley Fall2020

MedImageSegmentation

darknet

YOLOv4v / Scaled-YOLOv4 - Neural Networks for Object Detection (Windows and Linux version of Darknet )

dataset

医学影像数据集列表 『An Index for Medical Imaging Datasets』

DoDNet

[CVPR2021] DoDNet: Learning to segment multi-organ and tumors from multiple partially labeled datasets

einops

Deep learning operations reinvented (for pytorch, tensorflow, jax and others)

medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

MONAI_SwinUNETR

AI Toolkit for Healthcare Imaging

nnFormer

nnUNet

PCRL

official pytorch implementation of PCRL

pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

SegWithDistMap

How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study

Self-Tuning

Code release for "Self-Tuning for Data-Efficient Deep Learning" (ICML 2021)

spinalcordtoolbox

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

surface-distance

Library to compute surface distance based performance metrics for segmentation tasks.

Swin-Transformer

This is an official implementation for "Swin Transformer: Hierarchical Vision Transformer using Shifted Windows".

Swin-Unet

The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"

tensorboard-plugin-3d

torchinfo

View model summaries in PyTorch!

Transformer_for_medical_image_analysis

A collection of papers about Transformer in the field of medical image analysis.

ucasproposal

**科学院大学开题报告 LaTeX 模板 LaTeX Proposal Template for the University of Chinese Academy of Sciences

vedo

A python module for scientific analysis of 3D data

verse

Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020