Yeening / Attn-Unet-Prostate-Segmentation

Attention UNet for Promise12 Prostate Segmentation

Attn-Unet-Prostate-Segmentation

This is my Keras implementation of prostate MR images segmentation with Attention UNet(UNet with attention gates to make training foucus on Region of Interest)
Tested on Promise12 dataset, got DSC of 0.812

Run this net

• Download the promise12 dataset: download
  know about the competition: Promise12

• Put the training data in the folder data/train/ and unzip

• Run the main code at codes/main.py

Environment

• Python3
• Required packages:
  • Keras 2.2.4
  • SKlearn
  • scipy
  • scikit image
  • matplotlib
  • Python-OpenCV

You can manage your python environment easily with Anaconda, and you can find the required packages with PYPI

Segmentated images

Thanks to Nabsabraham and her focal-tversky-unet !