Yedomon

genome_Myriosclerotinia_2020

Genome assembly (short and long read) and quality control.

Tetep_Genome

Denovo assembly and analysis of Oryza sativa ssp. indica Tetep genome

academic-kickstart

canu

A single molecule sequence assembler for genomes large and small.

Chroloplast-genome-assembly

A pipeline for assemble chroloplast genome using short/long reads

common_scripts

my bin directory

continental

Code for manuscript on the timeline of cichlid diversification across continents

crossr

Compare transcriptomes from different species.

EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling

FindTelomeres

A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files

FOSC_multi-speed-genome

fpa

Filter of Pairwise Alignement

GBS-SNP-CROP

GBS SNP Calling Reference Optional Pipeline

GMATA

software GMATA

KewHybSeqWorkshop

Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.

kmersGWAS

A library for running k-mers based GWAS

Long-read-assembler-comparison

Benchmarking of long-read assembly tools for bacterial whole genomes

Maize_NC358

The repository for codes developed to generated the Maize NC358 assemblies and analyses.

merqury

k-mer based assembly evaluation

MultiPower

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

NLR-Annotator

NLR-Annotator upload

NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller

PaeAG1_genome

Assembly and annotation of the Pseudomonas aeruginosa AG1 genome

patchwork

The Composer of ggplots

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

plant_rgenes

spikemap

Maps made of spikes

svim-asm

Fork of SV caller SVIM for genome-genome alignments

yacrd

Yet Another Chimeric Read Detector