Genome assembly of Fusarium oxysporum f.sp. sesami
Here we summarized the scripts used for the genome assembly of the sesame wilt disease pathogen (Fusarium oxysporum f.sp. sesami).
Please refer to the following zenodo link for proper citation:
The repository is organized as follows:
01. Genome size estimation
02. Genome assembly
03. Assembly polishing
04. Mitochondrial genome retrieving
05. Assembly quality metrics
06. Whole genome alignment
07.Homologuous_contigs_detection
08.Contamination_investigation
Scripts in this repository are licensed under General Public License v3.
For information inquiry please email Keunpyo Lee PhD. (kplee@korea.kr)
For reproducibility, please consider some changes in regard to the working directories.