Yansen0515 / MegaLMM_for_Animal

Number of records for raw dataset ins this study

Title: Exploring a Bayesian sparse factor model-based strategy for the genetic analysis of thousands of MIR-spectra traits for animal breeding

Here are included Supplemental File 1 and Supplemental File 2.

Supplemental File 1 included 1 Table

Table S1. number of records of milk mid-infrared (MIR) spectra, fat percentage (Fat), methane (CH4), and somatic cell score (SCS) within the first parity (number of total animals is 3,302)

Supplemental File 2 included 3 Figures.

Figure S1. Example trace plot of the first 10 principal components on the saved MCMC samples for the G matrix of analysis in the Fat and milk MIR spectra dataset. The chain includes 100,000 iterations, and the first 10,000 are burn-in.

Figure S2. Example trace plot of the first 10 principal components on the saved MCMC samples for the G matrix of analysis in the CH4 and milk MIR spectra dataset. The chain includes 100,000 iterations, and the first 10,000 are burn-in.

Figure S3. Example trace plot of the first 10 principal components on the saved MCMC samples for the G matrix of analysis in the SCS and milk MIR spectra dataset. The chain includes 100,000 iterations, and the first 10,000 are burn-in.