YangLab@HKUST

STitch3D

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices

SpatialScope

A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models

MR-APSS

Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics

Portal

Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets

DGLSB

Deep Generative Learning via Schrödinger Bridge

XPASS

Cross-population analysis using GWAS summary statistics

LOG-TRAM

XMAP

3DVesselSegNet

hybrid representation learning approach for fully automatic and template-free vessel centerline extraction

mfair

mfair: Matrix Factorization with Auxiliary Information in R

PALM

FLAG

Flexible and Accurate Methods for Estimation and Inference of Gaussian Graphical Models with Applications

MATH-4432-Statistical-Machine-Learning

Tutorials for MATH 4432 Statistical Machine Learning, HKUST, Fall 2023

MRbenchmarking

MRAPSS_RealDataAnalysis_reproduce

R code for reproduce real data analysis in MRAPSS paper.

SRT_alignment_and_integration

Measurement and comparison of several slices aligning methods and data integrating mathods for spatial transcriptomics data using several ST datasets.

VCM

R package VCM contains three approaches for solving variance components model: PX-EM algorithm, MM algorithm and Method of Moments

VGrow-Pg

A tensorflow implementation of VGrow by using progressive growing method.

XPA

Cross-population analysis using the individual-level GWAS data

iGREX

Quantifying the impact of genetically regulated expression on complex traits and diseases

LSMM

Efficient statistical approach to integrating functional annotations with genome-wide association studies

scPI

scPI: A scalable framework for probabilistic inference insingle-cell RNA-sequencing data analysis

XPXP

BWMR

BWMR (Bayesian Weighted Mendelian Randomization)

FIRM

Fast Integration of single-cell RNA-sequencing data across Multiple platforms

GPU-LMM

LPM

Efficient statistical approach to characterize relationship among complex traits using summary statistics from multiple GWASs and functional annotations

LPM-sim

Simulation codes to reproduce the results in the LPM paper

LSMM-sim

Simulation codes and example to reproduce the results in the LSMM paper

SpatialScope-Beta