Yale Liu's starred repositories
gpt_academic
为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。
ComplexHeatmap
Make Complex Heatmaps
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
velocyto.R
RNA velocity estimation in R
scclusteval
Single Cell Cluster Evaluation
CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
celltalker
Inference of cell-cell communication from single-cell RNAseq data
cargo-download
Cargo subcommand for downloading crates directly from crates.io
RaceID3_StemID2
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3_StemID2_package repository, which contains the current version as an R package. This repository will not be updated anymore.
AdvancedHeatmapTutorial
for YouTube Channel
SingleCellAnalysis-murine-inflammatory-skin-conditions
R code and outputs for iScience paper
ModOfKerInf_RNAseqAnalysis
Differential expression analysis for a study investigating the modulation of inflammation in keratinocytes