Yale73

Yale Liu's starred repositories

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

Language:PythonGPL-3.063437 266 1558

seurat

R toolkit for single cell genomics

Language:RNOASSERTION2225 73 7833

ComplexHeatmap

Make Complex Heatmaps

Language:RNOASSERTION1278 33 1138

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Language:RGPL-3.0620 13 727

scRNA-seq

Language:SCSS526 39 33

scvelo

RNA Velocity generalized through dynamical modeling

Language:PythonBSD-3-Clause407 13 786

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

Language:R391 8 193

liger

R package for integrating and analyzing multiple single-cell datasets

Language:RGPL-3.0380 22 188

sceasy

A package to help convert different single-cell data formats to each other

Language:RGPL-3.0361 8 74

monocle3

Language:RNOASSERTION323 21 637

corrplot

A visual exploratory tool on correlation matrix

Language:RNOASSERTION308 14 154

excelerate-scRNAseq

Single RNA-seq data analysis with R (Finland, May, 2019)

Language:HTML216 62 3

ggnet

Network visualization with ggplot2

Language:R194 16 49

dittoSeq

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

Language:RMIT185 5 77

velocyto.R

RNA velocity estimation in R

Language:R177 17 192

SingleR

Clone of the Bioconductor repository for the SingleR package.

Language:RGPL-3.0171 12 209

iCellR

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

Language:R119 13 34

ROGUE

Assessing the purity of single cell population

Language:RBSD-3-Clause92 4 13

scclusteval

Single Cell Cluster Evaluation

Language:RNOASSERTION82 7 18

CITE-seq-Count

A tool that allows to get UMI counts from a single cell protein assay

Language:PythonMIT76 11 177

AutoGeneS

Language:Jupyter NotebookMIT53 6 27

celltalker

Inference of cell-cell communication from single-cell RNAseq data

Language:RNOASSERTION45 4 18

scTensor

R package for detection of cell-cell interaction using Non-negative Tensor Decomposition

Language:R32 17 22

cargo-download

Cargo subcommand for downloading crates directly from crates.io

Language:RustMIT28 5 7

DrImpute

Imputing dropout events in single-cell RNA-sequencing data

Language:R16 3 6

scEpath

An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data

Language:C++16 3 4

RaceID3_StemID2

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3_StemID2_package repository, which contains the current version as an R package. This repository will not be updated anymore.

Language:R15 3 4