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TOM YAN's starred repositories

ML-For-Beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

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photopea

Photopea is online image editor

7217 86 6887

r4ds

R for data science: a book

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joyful-pandas

Pandas中文教程

Language:Jupyter Notebook945 260

CHM13

The complete sequence of a human genome

NOASSERTION887 66 93

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

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ggside

ggplot2 extension allowing for plotting various geometries as side panels using the ggplot2 API

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cols4all

Colors for all (R package)

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plotsr

Tool to plot synteny and structural rearrangements between genomes

Language:PythonMIT268 5 79

KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

Language:C++GPL-3.0201 23 162

methylKit

R package for DNA methylation analysis

Language:R196 15 245

gtExtras

A Collection of Helper Functions for the gt Package.

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Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Language:C++GPL-3.0179 7 70

jjAnno

An annotation package for ggplot plot

Language:RNOASSERTION105 4 3

loopurrr

Translate purrr functions into regular for loops

Language:RNOASSERTION81 2 9

TransposonUltimate

TransposonUltimate - a holistic set of tools for transposon identification

GPL-3.075 6 15

bed-reader

A library for easy, fast, and efficient reading & writing of PLINK Bed files

Language:RustApache-2.071 2 22

TGG

tomato graph pangenome

Language:PythonMIT7000

ggplot2

ggplot2 plotting related files

55 10

BookChapter-RNA-Seq-Analyses

Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis

Language:ShellGPL-3.037 4 1

grosling

R interface to 'Gos'

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ggdatasaver

Automatically save data associated with a 'ggplot2' plot

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AnnoSINE

SINE annotation tool for plant genomes

Language:PythonMIT1800

MYB_annotator

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

Language:PythonGPL-3.016 3 3