Xparx

emacs-init

My emacs init settings

genespider-presentation

GeneSPIDER slides

halftimeseminar

Half-time seminar presentation

inferelator

Inferelator_ng fork to handle single-cell RNA sequencing data

Inferring-MYC-GRN-presentation

Progress report of the MYC inferrence project

intro_to_org-mode

Small intro to orgmode for Emacs

L1-pitfalls-poster

L1-pitfalls-presentation

lassim

Python toolbox implementing LASSIM (LArge Scale SIMulation based network identification), a new simulation-based integrative framework for GRN inference.

optimal_sparsity_criteria_presentation_2012

Presentation held at group retreat 2012 on optimal sparsity criteria

org-ref

org-mode modules for citations, cross-references, bibliographies in org-mode and useful bibtex tools to go with it.

PhD-thesis_Exploring-the-Boundaries-of-Gene-Regulatory-Network-Inference

python_koans

Python Koans - Learn Python through TDD

pyTorchReg

Applied Sparse regularization (L1), Weight decay regularization (L2), ElasticNet, GroupLasso and GroupSparseLasso to Neuronal Network.

rotate-screen

Script for rotating a screen in linux

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scvelo

RNA Velocity using dynamical modeling

texmf

Needed and useful stuff related to tex and its family

umap

Uniform Manifold Approximation and Projection