XiDsLab / Festem_paper

Directly selecting differentially expressed genes for single-cell clustering analyses

Codes for "Directly selecting differentially expressed genes for single-cell clustering analyses".

Including pre-release version of Festem.

To install EMDE (a pre-release version of Festem), download EMDE_V0.zip and execute:

install.packages("EMDE_V0.tar.gz",repo=NULL)

EMDE is also available at https://github.com/XiDsLab/Festem.

For convenience, we provide a one-line analysis code for the IFNB dataset (Kang dataset). R packages required in this analysis are listed in folder "3_IFNB".

bash run_IFNB.sh